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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHA_1800Aminotransferase class V. (393 aa)    
Predicted Functional Partners:
LHA_0892
Homologs of previously reported genes of unknown function.
 
 
 0.961
LHA_2201
Putative iron-sulpher cluster proteins NifU; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.945
sufS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 
0.921
trxB
Thioredoxin reductase.
  
 
 0.904
ycf
Putative ATP-dependent transporter ycf16; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.894
LHA_0890
Homologs of previously reported genes of unknown function.
 
 
 0.845
sufB
Component of SufBCD complex; Function of strongly homologous gene; putative transporter.
 
 
 0.843
LHA_0576
Homologs of previously reported genes of unknown function.
    
   0.778
LHA_2609
Putative Aspartate racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.623
ybeB
Putative Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
       0.603
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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