Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lspJLspJ. (205 aa)    
Predicted Functional Partners:
Ispl
Type II secretory pathway protein LspI; Function of strongly homologous gene; transporter.
 
 
 0.999
Ispk
Type II secretory pathway protein; Function of strongly homologous gene; transporter.
 
 
 0.999
xcpU
General secretion pathway protein LspH.
 
 
 0.997
gspG
Pseudopilin, cryptic, general secretion pathway; Function of strongly homologous gene; transporter.
 
 
 0.996
xcpS
General secretion pathway protein F.
 
  
 0.972
lspD
Type II protein secretion LspD.
 
  
 0.972
lspL
Type II secretory pathway protein LspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.931
LHA_0973
Conserved protein of unknown function; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.824
gspE
General secretory pathway component, cryptic; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.800
LHA_0516
Protein of unknown function; No homology to any previously reported sequences.
  
 
 0.789
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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