Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LHA_0068 | ybbA | LHA_0068 | LHA_1945 | ABC transporter, permease. | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.959 |
| LHA_0157 | LHA_3191 | LHA_0157 | LHA_3191 | Membrane protein of unknown function; No homology to any previously reported sequences. | ABC transporter, permease protein. | 0.444 |
| LHA_0157 | ybbA | LHA_0157 | LHA_1945 | Membrane protein of unknown function; No homology to any previously reported sequences. | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.923 |
| LHA_1942 | LHA_1944 | LHA_1942 | LHA_1944 | Import inner membrane translocase subunit Tim44; Function of strongly homologous gene; membrane component. | Membrane protein of unknown function; No homology to any previously reported sequences. | 0.532 |
| LHA_1942 | ybbA | LHA_1942 | LHA_1945 | Import inner membrane translocase subunit Tim44; Function of strongly homologous gene; membrane component. | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.524 |
| LHA_1944 | LHA_1942 | LHA_1944 | LHA_1942 | Membrane protein of unknown function; No homology to any previously reported sequences. | Import inner membrane translocase subunit Tim44; Function of strongly homologous gene; membrane component. | 0.532 |
| LHA_1944 | tesA | LHA_1944 | LHA_1947 | Membrane protein of unknown function; No homology to any previously reported sequences. | Acyl-CoA thioesterase I. | 0.911 |
| LHA_1944 | ybbA | LHA_1944 | LHA_1945 | Membrane protein of unknown function; No homology to any previously reported sequences. | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.943 |
| LHA_3191 | LHA_0157 | LHA_3191 | LHA_0157 | ABC transporter, permease protein. | Membrane protein of unknown function; No homology to any previously reported sequences. | 0.444 |
| LHA_3191 | lolA | LHA_3191 | LHA_2228 | ABC transporter, permease protein. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.811 |
| LHA_3191 | lolC | LHA_3191 | LHA_1044 | ABC transporter, permease protein. | Lipoprotein-releasing system transmembrane protein lolC. | 0.921 |
| LHA_3191 | rsmA | LHA_3191 | LHA_3195 | ABC transporter, permease protein. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.670 |
| LHA_3191 | ybbA | LHA_3191 | LHA_1945 | ABC transporter, permease protein. | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.786 |
| lolA | LHA_3191 | LHA_2228 | LHA_3191 | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | ABC transporter, permease protein. | 0.811 |
| lolA | lolC | LHA_2228 | LHA_1044 | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Lipoprotein-releasing system transmembrane protein lolC. | 0.901 |
| lolA | ybbA | LHA_2228 | LHA_1945 | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.793 |
| lolC | LHA_3191 | LHA_1044 | LHA_3191 | Lipoprotein-releasing system transmembrane protein lolC. | ABC transporter, permease protein. | 0.921 |
| lolC | lolA | LHA_1044 | LHA_2228 | Lipoprotein-releasing system transmembrane protein lolC. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.901 |
| lolC | ybbA | LHA_1044 | LHA_1945 | Lipoprotein-releasing system transmembrane protein lolC. | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.654 |
| msrA | rsmA | LHA_0099 | LHA_3195 | Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.571 |
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