flgC protein (Legionella hackeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

flgC

Flagellar basal-body rod protein flgC. (140 aa)

Predicted Functional Partners:

flgJ

0.999

flgG

0.999

LHA_2034

0.998

flgD

0.998

flgB

0.998

LHA_2217

0.997

flgI

0.993

flgH

0.993

fliE

0.993

fliQ

0.993

Your Current Organism:

Legionella hackeliae

NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHA_2034	LHA_2217	LHA_2034	LHA_2217	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.983
LHA_2034	flgB	LHA_2034	LHA_2038	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.997
LHA_2034	flgC	LHA_2034	LHA_2037	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgC.	0.998
LHA_2034	flgD	LHA_2034	LHA_2036	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.995
LHA_2034	flgG	LHA_2034	LHA_2033	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	0.996
LHA_2034	flgH	LHA_2034	LHA_2032	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.998
LHA_2034	flgI	LHA_2034	LHA_2031	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar basal body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.996
LHA_2034	flgJ	LHA_2034	LHA_2030	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar biosynthesis protein FlgJ.	0.999
LHA_2034	fliE	LHA_2034	LHA_2218	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar hook-basal body complex protein fliE.	0.934
LHA_2034	fliQ	LHA_2034	LHA_2258	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.910
LHA_2217	LHA_2034	LHA_2217	LHA_2034	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar biosynthesis protein FlgF; Belongs to the flagella basal body rod proteins family.	0.983
LHA_2217	flgB	LHA_2217	LHA_2038	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein flgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.	0.995
LHA_2217	flgC	LHA_2217	LHA_2037	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein flgC.	0.997
LHA_2217	flgD	LHA_2217	LHA_2036	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.	0.990
LHA_2217	flgG	LHA_2217	LHA_2033	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal-body rod protein flgG; Belongs to the flagella basal body rod proteins family.	0.993
LHA_2217	flgH	LHA_2217	LHA_2032	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.993
LHA_2217	flgI	LHA_2217	LHA_2031	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal body P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.991
LHA_2217	flgJ	LHA_2217	LHA_2030	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar biosynthesis protein FlgJ.	0.999
LHA_2217	fliE	LHA_2217	LHA_2218	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar hook-basal body complex protein fliE.	0.993
LHA_2217	fliQ	LHA_2217	LHA_2258	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.991