Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHA_2041Homologs of previously reported genes of unknown function. (284 aa)    
Predicted Functional Partners:
LHA_2040
Homologs of previously reported genes of unknown function.
 
     0.946
LHA_2042
Exported protein of unknown function; No homology to any previously reported sequences.
       0.737
LHA_2043
Oxidoreductase dehydrogenase, short chain; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.614
groL
60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
  0.594
LHA_0996
Putative sterol desaturase-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 
 0.536
LHA_1995
Beta-ketoacyl synthase (fragment).
 
 
 
 0.464
LHA_1119
Long-chain-fatty-acid--CoA ligase [Beta-ketoacyl synthase active site]; Function of strongly homologous gene; enzyme.
 
 
 
 0.459
fadH
2,4-dienoyl-CoA reductase [NADPH].
     
 0.418
exoD
Exopolysaccharide synthesis protein.
 
     0.411
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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