STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iscAIron-binding protein iscA; Belongs to the HesB/IscA family. (123 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase.
 
 
 0.991
LHA_2201
Putative iron-sulpher cluster proteins NifU; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.974
LHA_0892
Homologs of previously reported genes of unknown function.
 
 
 0.971
LHA_0887
Rrf2 family protein.
  
  
 0.842
sufB
Component of SufBCD complex; Function of strongly homologous gene; putative transporter.
  
 
 0.780
ycf
Putative ATP-dependent transporter ycf16; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.765
LHA_0890
Homologs of previously reported genes of unknown function.
  
 
 0.736
yfhQ
Putative methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
  
    0.724
dnaK
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.700
djlA
DnaJ-like protein djlA; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host.
  
 
 0.695
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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