Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| LHA_2226 | aat | LHA_2226 | LHA_2231 | Putative Naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.462 |
| LHA_2226 | ftsK | LHA_2226 | LHA_2229 | Putative Naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | DNA translocase ftsK. | 0.651 |
| LHA_2226 | lolA | LHA_2226 | LHA_2228 | Putative Naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.651 |
| LHA_2226 | rarA | LHA_2226 | LHA_2227 | Putative Naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Replication-associated recombination protein A. | 0.667 |
| LHA_2226 | trxB | LHA_2226 | LHA_2230 | Putative Naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Thioredoxin reductase. | 0.480 |
| aat | LHA_2226 | LHA_2231 | LHA_2226 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Putative Naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.462 |
| aat | clpS | LHA_2231 | LHA_1242 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.816 |
| aat | ftsK | LHA_2231 | LHA_2229 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | DNA translocase ftsK. | 0.672 |
| aat | infA | LHA_2231 | LHA_2232 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Translation initiation factor IF-1 (modular protein); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.743 |
| aat | lolA | LHA_2231 | LHA_2228 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.689 |
| aat | pheA | LHA_2231 | LHA_0936 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | P-protein [Includes: Chorismate mutase; Prephenate dehydratase]. | 0.472 |
| aat | rarA | LHA_2231 | LHA_2227 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Replication-associated recombination protein A. | 0.612 |
| aat | trxB | LHA_2231 | LHA_2230 | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | Thioredoxin reductase. | 0.803 |
| clpS | aat | LHA_1242 | LHA_2231 | ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.816 |
| ftsK | LHA_2226 | LHA_2229 | LHA_2226 | DNA translocase ftsK. | Putative Naringenin-chalcone synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.651 |
| ftsK | aat | LHA_2229 | LHA_2231 | DNA translocase ftsK. | Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine. | 0.672 |
| ftsK | infA | LHA_2229 | LHA_2232 | DNA translocase ftsK. | Translation initiation factor IF-1 (modular protein); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.576 |
| ftsK | lolA | LHA_2229 | LHA_2228 | DNA translocase ftsK. | Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). | 0.855 |
| ftsK | rarA | LHA_2229 | LHA_2227 | DNA translocase ftsK. | Replication-associated recombination protein A. | 0.835 |
| ftsK | trxB | LHA_2229 | LHA_2230 | DNA translocase ftsK. | Thioredoxin reductase. | 0.635 |
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