Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LHA_2266Homologs of previously reported genes of unknown function. (291 aa)    
Predicted Functional Partners:
icmE/dotG
Component of the Dot/Icm secretion system. Major component of a channel; Function of strongly homologous gene; structure.
   
   0.619
LHA_0221
Putative arginine-binding periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial solute-binding protein 3 family.
  
     0.506
LHA_2317
Putative amino acid ABC transporter, periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.498
glnP
Putative glutamine transport system permease protein glnP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.484
LHA_2267
Exported protein of unknown function; No homology to any previously reported sequences.
       0.453
LHA_3143
Putative arginine 3rd transport system periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial solute-binding protein 3 family.
  
     0.452
LHA_1533
Exported protein of unknown function; No homology to any previously reported sequences.
 
     0.447
artJ
Arginine 3rd transport system periplasmic binding protein; Function of strongly homologous gene; transporter.
 
     0.428
LHA_0378
Putative arginine 3rd transport system periplasmic binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the bacterial solute-binding protein 3 family.
 
     0.424
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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