STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rimKRibosomal protein S6 modification protein; Belongs to the RimK family. (302 aa)    
Predicted Functional Partners:
LHA_2422
Succinylglutamate desuccinylase/aspartoacylase family protein.
 
     0.966
LHA_3147
Homologs of previously reported genes of unknown function.
 
    0.714
LHA_2426
Cytochrome oxidase assembly family protein (fragment).
     
 0.707
LHA_2424
Electron transport protein SCO1/SenC; Function of strongly homologous gene; carrier.
       0.695
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.695
LHA_2427
Homologs of previously reported genes of unknown function.
       0.695
LHA_2428
Homologs of previously reported genes of unknown function.
       0.695
LHA_2429
Homologs of previously reported genes of unknown function.
       0.635
LHA_2430
Glutathione S-transferase; Belongs to the GST superfamily.
       0.409
LHA_0484
Homologs of previously reported genes of unknown function.
       0.404
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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