Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHA_2435Signal peptide protein. (95 aa)    
Predicted Functional Partners:
LHA_2433
Homologs of previously reported genes of unknown function; Belongs to the UPF0276 family.
 
  
 0.995
LHA_2434
Homologs of previously reported genes of unknown function.
 
  
 0.988
LHA_2436
Homologs of previously reported genes of unknown function; Belongs to the UPF0312 family.
 
     0.850
LHA_2431
Homologs of previously reported genes of unknown function.
 
   
 0.846
LHA_2438
YceI-like family protein; Belongs to the UPF0312 family.
       0.819
LHA_1276
Conserved protein of unknown function [Hemolysin-type calcium-binding region]; Homologs of previously reported genes of unknown function.
   
    0.810
LHA_2437
Cytochrome b561 transmembrane protein.
 
     0.783
LHA_2630
Type IV secretory protein VirB4 component.
   
    0.703
yloB
Calcium-transporting ATPase.
   
    0.660
icmB
IcmB protein.
  
    0.636
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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