STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PhyhdPhytanoyl-CoA dioxygenase domain-containing protein 1. (276 aa)    
Predicted Functional Partners:
LHA_2569
Conserved exported protein of unknown function [coiled-coil domain]; Homologs of previously reported genes of unknown function.
       0.737
LHA_2609
Putative Aspartate racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.687
LHA_1528
Phytanoyl-CoA dioxygenase; Function of strongly homologous gene; enzyme.
  
     0.534
LHA_2570
Homologs of previously reported genes of unknown function.
       0.529
LHA_2567
Conserved protein of unknown function [EAL domain]; Homologs of previously reported genes of unknown function.
       0.494
LHA_0960
Homologs of previously reported genes of unknown function.
  
     0.446
LHA_2013
Exported protein of unknown function [Thaumatin, pathogenesis-related]; No homology to any previously reported sequences.
  
     0.444
LHA_1398
Protein of unknown function; No homology to any previously reported sequences.
  
     0.438
DWF
7-dehydrocholesterol reductase.
  
     0.436
LHA_1119
Long-chain-fatty-acid--CoA ligase [Beta-ketoacyl synthase active site]; Function of strongly homologous gene; enzyme.
  
 
 0.436
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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