spmA protein (Legionella hackeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

spmA

Spore maturation protein A. (202 aa)

Predicted Functional Partners:

spmB

0.999

LHA_2792

0.748

ribBA

0.461

dacA

0.459

holC

0.451

pepA

0.451

Your Current Organism:

Legionella hackeliae

NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHA_2792	holC	LHA_2792	LHA_0843	Homologs of previously reported genes of unknown function.	DNA polymerase III subunit chi.	0.485
LHA_2792	pepA	LHA_2792	LHA_0844	Homologs of previously reported genes of unknown function.	Putative cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.548
LHA_2792	spmA	LHA_2792	LHA_2791	Homologs of previously reported genes of unknown function.	Spore maturation protein A.	0.748
LHA_2792	spmB	LHA_2792	LHA_2790	Homologs of previously reported genes of unknown function.	Spore maturation protein B.	0.748
dacA	spmA	LHA_1642	LHA_2791	D-alanyl-D-alanine carboxypeptidase dacA; Belongs to the peptidase S11 family.	Spore maturation protein A.	0.459
dacA	spmB	LHA_1642	LHA_2790	D-alanyl-D-alanine carboxypeptidase dacA; Belongs to the peptidase S11 family.	Spore maturation protein B.	0.447
holC	LHA_2792	LHA_0843	LHA_2792	DNA polymerase III subunit chi.	Homologs of previously reported genes of unknown function.	0.485
holC	pepA	LHA_0843	LHA_0844	DNA polymerase III subunit chi.	Putative cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.909
holC	spmA	LHA_0843	LHA_2791	DNA polymerase III subunit chi.	Spore maturation protein A.	0.451
pepA	LHA_2792	LHA_0844	LHA_2792	Putative cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	Homologs of previously reported genes of unknown function.	0.548
pepA	holC	LHA_0844	LHA_0843	Putative cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	DNA polymerase III subunit chi.	0.909
pepA	spmA	LHA_0844	LHA_2791	Putative cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	Spore maturation protein A.	0.451
ribBA	spmA	LHA_1384	LHA_2791	Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	Spore maturation protein A.	0.461
ribBA	spmB	LHA_1384	LHA_2790	Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	Spore maturation protein B.	0.459
spmA	LHA_2792	LHA_2791	LHA_2792	Spore maturation protein A.	Homologs of previously reported genes of unknown function.	0.748
spmA	dacA	LHA_2791	LHA_1642	Spore maturation protein A.	D-alanyl-D-alanine carboxypeptidase dacA; Belongs to the peptidase S11 family.	0.459
spmA	holC	LHA_2791	LHA_0843	Spore maturation protein A.	DNA polymerase III subunit chi.	0.451
spmA	pepA	LHA_2791	LHA_0844	Spore maturation protein A.	Putative cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.451
spmA	ribBA	LHA_2791	LHA_1384	Spore maturation protein A.	Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.461
spmA	spmB	LHA_2791	LHA_2790	Spore maturation protein A.	Spore maturation protein B.	0.999