Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nmtProtein NMT1 homolog. (312 aa)    
Predicted Functional Partners:
LHA_0417
Phosphomethylpyrimidine kinase.
 
  
  0.926
LHA_0287
ABC transporter, ATP binding protein.
  
 
 0.911
pdxH
Pyridoxal 5'-phosphate synthase; Function of strongly homologous gene; enzyme.
    
  0.804
pdxH-2
Pyridoxine/pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
    
  0.804
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
    
 
 0.642
LHA_0488
Homologs of previously reported genes of unknown function.
  
     0.639
LHA_3028
Homologs of previously reported genes of unknown function.
       0.552
LHA_3138
Protein of unknown function; No homology to any previously reported sequences.
  
     0.431
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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