LHA_3201 protein (Legionella hackeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LHA_3201

Homologs of previously reported genes of unknown function. (64 aa)

Predicted Functional Partners:

ubiB-2

0.803

ubiD

0.803

LHA_3204

0.545

LHA_3205

0.545

rho

0.423

Your Current Organism:

Legionella hackeliae

NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHA_3201	LHA_3204	LHA_3201	LHA_3204	Homologs of previously reported genes of unknown function.	8-amino-7-oxononanoate synthase.	0.545
LHA_3201	LHA_3205	LHA_3201	LHA_3205	Homologs of previously reported genes of unknown function.	AMP-dependent synthetase and ligase (fragment).	0.545
LHA_3201	rho	LHA_3201	LHA_3207	Homologs of previously reported genes of unknown function.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.423
LHA_3201	ubiB-2	LHA_3201	LHA_3202	Homologs of previously reported genes of unknown function.	CDP-6-deoxy-3,4-glucoseen reductase.	0.803
LHA_3201	ubiD	LHA_3201	LHA_3203	Homologs of previously reported genes of unknown function.	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.	0.803
LHA_3204	LHA_3201	LHA_3204	LHA_3201	8-amino-7-oxononanoate synthase.	Homologs of previously reported genes of unknown function.	0.545
LHA_3204	LHA_3205	LHA_3204	LHA_3205	8-amino-7-oxononanoate synthase.	AMP-dependent synthetase and ligase (fragment).	0.997
LHA_3204	rho	LHA_3204	LHA_3207	8-amino-7-oxononanoate synthase.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.461
LHA_3204	ubiB-2	LHA_3204	LHA_3202	8-amino-7-oxononanoate synthase.	CDP-6-deoxy-3,4-glucoseen reductase.	0.553
LHA_3204	ubiD	LHA_3204	LHA_3203	8-amino-7-oxononanoate synthase.	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.	0.573
LHA_3205	LHA_3201	LHA_3205	LHA_3201	AMP-dependent synthetase and ligase (fragment).	Homologs of previously reported genes of unknown function.	0.545
LHA_3205	LHA_3204	LHA_3205	LHA_3204	AMP-dependent synthetase and ligase (fragment).	8-amino-7-oxononanoate synthase.	0.997
LHA_3205	rho	LHA_3205	LHA_3207	AMP-dependent synthetase and ligase (fragment).	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.512
LHA_3205	ubiB-2	LHA_3205	LHA_3202	AMP-dependent synthetase and ligase (fragment).	CDP-6-deoxy-3,4-glucoseen reductase.	0.640
LHA_3205	ubiD	LHA_3205	LHA_3203	AMP-dependent synthetase and ligase (fragment).	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.	0.545
rho	LHA_3201	LHA_3207	LHA_3201	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	Homologs of previously reported genes of unknown function.	0.423
rho	LHA_3204	LHA_3207	LHA_3204	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	8-amino-7-oxononanoate synthase.	0.461
rho	LHA_3205	LHA_3207	LHA_3205	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	AMP-dependent synthetase and ligase (fragment).	0.512
rho	ubiB-2	LHA_3207	LHA_3202	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	CDP-6-deoxy-3,4-glucoseen reductase.	0.423
rho	ubiD	LHA_3207	LHA_3203	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis.	0.427