Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
alkBAlkane 1-monooxygenase 1; Gene remnant;/product='fragment of protein of unknown function'. (353 aa)    
Predicted Functional Partners:
adhA
Putative alcohol dehydrogenase AdhA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
  0.900
LHA_0996
Putative sterol desaturase-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.738
fadH
2,4-dienoyl-CoA reductase [NADPH].
 
   
 0.733
LHA_3252
Acyl CoA dehydrogenase, short chain specific.
 
   
 0.673
LHA_1119
Long-chain-fatty-acid--CoA ligase [Beta-ketoacyl synthase active site]; Function of strongly homologous gene; enzyme.
  
 
 0.666
LHA_1995
Beta-ketoacyl synthase (fragment).
  
 
 0.666
LHA_2609
Putative Aspartate racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.591
rubA
Rubredoxin-1.
 
  
 0.556
LHA_0202
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.503
LHA_3253
Homologs of previously reported genes of unknown function.
       0.459
Your Current Organism:
Legionella hackeliae
NCBI taxonomy Id: 449
Other names: ATCC 35250, CCUG 31232, CCUG 31232 A, CIP 103844, DSM 19214, JCM 7563, L. hackeliae, NCTC 11979, strain Lansing 2
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