STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL30708.1Tripartite tricarboxylate transporter TctB family protein. (197 aa)    
Predicted Functional Partners:
SHL30736.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
    0.943
SHM45919.1
Tripartite tricarboxylate transporter TctB family protein.
  
  
 
0.877
SHL30673.1
Putative tricarboxylic transport membrane protein.
 
 
  0.749
SHL30836.1
Gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03.
 
     0.734
SHM91412.1
Tripartite tricarboxylate transporter TctB family protein.
  
  
  0.702
SHL30767.1
Chromate transporter.
 
     0.664
SHL30804.1
Chromate transporter.
 
     0.657
SHM68848.1
EamA-like transporter family protein.
  
     0.583
SHM89693.1
Helix-turn-helix.
  
     0.566
SHM13092.1
Type I phosphodiesterase / nucleotide pyrophosphatase.
  
     0.533
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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