STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL42712.1Putative tricarboxylic transport membrane protein. (508 aa)    
Predicted Functional Partners:
SHL42656.1
Putative tricarboxylic transport membrane protein.
 
    0.957
SHL42684.1
Putative tricarboxylic transport membrane protein.
 
 
  0.941
SHL30121.1
Putative tricarboxylic transport membrane protein.
 
    0.819
SHM07789.1
Putative tricarboxylic transport membrane protein.
 
    0.819
SHM25733.1
Putative tricarboxylic transport membrane protein.
 
    0.811
SHM46312.1
Putative tricarboxylic transport membrane protein.
  
    0.809
SHL30267.1
Putative tricarboxylic transport membrane protein.
  
    0.808
SHL30309.1
Putative tricarboxylic transport membrane protein.
  
    0.808
SHL69822.1
Putative tricarboxylic transport membrane protein.
 
    0.807
SHL68520.1
Putative tricarboxylic transport membrane protein.
 
    0.799
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.