STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL45522.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
SHL66283.1
Protein of unknown function.
  
     0.705
SHM63770.1
Protein of unknown function.
  
     0.596
SHL45492.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.565
SHM81962.1
GlcNAc-PI de-N-acetylase.
  
     0.529
SHM94968.1
Uncharacterized lipoprotein.
  
     0.511
SHM81896.1
GlcNAc-PI de-N-acetylase.
  
     0.505
SHL50426.1
Myo-inositol-1(or 4)-monophosphatase.
       0.502
SHL45557.1
Hypothetical protein.
       0.482
SHL39831.1
Nucleoid-associated protein.
  
     0.468
SHM35296.1
Uncharacterized conserved protein YcfJ, contains glycine zipper 2TM domain.
  
    0.404
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.