STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL45840.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
SHL45871.1
tRNA-(ms[2]io[6]A)-hydroxylase.
 
     0.890
SHL45906.1
AAA ATPase domain-containing protein.
 
     0.792
SHL77718.1
Acetyltransferase (GNAT) domain-containing protein.
  
    0.603
SHM45824.1
Ribonucleoside-diphosphate reductase beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family.
  
     0.596
SHL45800.1
Aconitase; Belongs to the aconitase/IPM isomerase family.
       0.578
SHM23922.1
Beta-barrel assembly machine subunit BamC.
  
     0.510
SHM81988.1
O-antigen ligase.
  
     0.510
SHL28204.1
Thioesterase domain-containing protein, putative.
  
     0.507
SHM52745.1
Hypothetical protein.
  
     0.492
SHM08793.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.487
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.