STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL61678.1Nucleotide-binding universal stress protein, UspA family. (160 aa)    
Predicted Functional Partners:
SHL61742.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.809
SHL61714.1
C4-dicarboxylate transporter, DctM subunit.
 
     0.664
SHL61775.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.580
SHL84359.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.514
SHM83227.1
Carbohydrate binding module (family 35).
  
     0.489
SHL63039.1
Hypothetical protein.
  
     0.453
SHM12140.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.452
SHL61554.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.439
SHM12162.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.435
SHL61588.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.433
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.