STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL68493.1DNA-binding transcriptional regulator, GntR family. (227 aa)    
Predicted Functional Partners:
SHL28824.1
DNA-binding transcriptional regulator, FadR family.
  
    0.770
SHM80504.1
Transcriptional regulator, GntR family.
  
     0.768
SHL52559.1
DNA-binding transcriptional regulator, FadR family.
  
    0.758
SHM55839.1
DNA-binding transcriptional regulator, FadR family.
  
    0.750
SHM17177.1
Transcriptional regulator, GntR family.
  
    0.749
SHM21589.1
GntR family transcriptional regulator, glc operon transcriptional activator.
  
    0.719
SHM01618.1
DNA-binding transcriptional regulator, FadR family.
  
    0.708
SHM96180.1
Transcriptional regulator, GntR family.
  
    0.698
SHM55147.1
DNA-binding transcriptional regulator, FadR family.
  
    0.690
SHM46288.1
DNA-binding transcriptional regulator, GntR family.
  
     0.686
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.