STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL70598.1Siderophore synthetase component. (681 aa)    
Predicted Functional Partners:
SHL70690.1
Siderophore synthetase component.
     0.970
SHL70630.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
    0.874
SHL70661.1
Siderophore synthetase component.
 
    
0.841
SHL70808.1
Hypothetical protein.
 
     0.752
SHM41574.1
Glucose uptake protein GlcU.
  
     0.750
SHM36326.1
Hypothetical protein.
  
     0.734
SHL70202.1
Transcriptional regulator, AbiEi antitoxin, Type IV TA system.
  
     0.691
SHL99607.1
Protein of unknown function.
  
     0.674
SHM45919.1
Tripartite tricarboxylate transporter TctB family protein.
  
     0.629
SHM34102.1
Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.589
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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