STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL78662.1Conjugative coupling factor TraD, TOL family. (725 aa)    
Predicted Functional Partners:
SHL78695.1
Integrating conjugative element membrane protein, PFL_4697 family.
 
     0.957
SHL78598.1
Transglycosylase SLT domain-containing protein.
 
   
 0.910
SHL79025.1
Conjugative transfer ATPase, PFL_4706 family.
 
  
 0.909
SHL78632.1
Integrating conjugative element protein, PFL_4695 family.
 
     0.907
SHL78568.1
Integrating conjugative element protein, PFL_4693 family.
 
     0.898
SHL78472.1
Type IV pili sensor histidine kinase and response regulator.
 
     0.886
SHL78842.1
Conjugative transfer region protein, TIGR03750 family.
 
     0.855
SHL78873.1
Integrating conjugative element protein, PFL_4703 family.
 
     0.855
SHL78916.1
Integrating conjugative element protein, PFL_4704 family.
 
     0.855
SHL78949.1
Integrating conjugative element protein, PFL_4705 family.
 
     0.855
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.