Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL44277.1 | SHL95504.1 | SAMN05660971_00585 | SAMN05660971_01801 | Transcriptional regulator, XRE family with cupin sensor. | Putative acetyltransferase. | 0.457 |
SHL44277.1 | argA | SAMN05660971_00585 | SAMN05660971_02571 | Transcriptional regulator, XRE family with cupin sensor. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.585 |
SHL95400.1 | SHL95435.1 | SAMN05660971_01797 | SAMN05660971_01798 | Transmembrane protein. | ParD-like antitoxin of type II toxin-antitoxin system. | 0.569 |
SHL95400.1 | SHL95482.1 | SAMN05660971_01797 | SAMN05660971_01800 | Transmembrane protein. | Predicted ATPase. | 0.534 |
SHL95400.1 | SHL95504.1 | SAMN05660971_01797 | SAMN05660971_01801 | Transmembrane protein. | Putative acetyltransferase. | 0.471 |
SHL95400.1 | map | SAMN05660971_01797 | SAMN05660971_01799 | Transmembrane protein. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.471 |
SHL95435.1 | SHL95400.1 | SAMN05660971_01798 | SAMN05660971_01797 | ParD-like antitoxin of type II toxin-antitoxin system. | Transmembrane protein. | 0.569 |
SHL95435.1 | SHL95482.1 | SAMN05660971_01798 | SAMN05660971_01800 | ParD-like antitoxin of type II toxin-antitoxin system. | Predicted ATPase. | 0.773 |
SHL95435.1 | SHL95504.1 | SAMN05660971_01798 | SAMN05660971_01801 | ParD-like antitoxin of type II toxin-antitoxin system. | Putative acetyltransferase. | 0.773 |
SHL95435.1 | SHL95529.1 | SAMN05660971_01798 | SAMN05660971_01802 | ParD-like antitoxin of type II toxin-antitoxin system. | Uncharacterized conserved protein YndB, AHSA1/START domain. | 0.473 |
SHL95435.1 | map | SAMN05660971_01798 | SAMN05660971_01799 | ParD-like antitoxin of type II toxin-antitoxin system. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.890 |
SHL95482.1 | SHL95400.1 | SAMN05660971_01800 | SAMN05660971_01797 | Predicted ATPase. | Transmembrane protein. | 0.534 |
SHL95482.1 | SHL95435.1 | SAMN05660971_01800 | SAMN05660971_01798 | Predicted ATPase. | ParD-like antitoxin of type II toxin-antitoxin system. | 0.773 |
SHL95482.1 | SHL95504.1 | SAMN05660971_01800 | SAMN05660971_01801 | Predicted ATPase. | Putative acetyltransferase. | 0.773 |
SHL95482.1 | SHL95529.1 | SAMN05660971_01800 | SAMN05660971_01802 | Predicted ATPase. | Uncharacterized conserved protein YndB, AHSA1/START domain. | 0.473 |
SHL95482.1 | map | SAMN05660971_01800 | SAMN05660971_01799 | Predicted ATPase. | Methionyl aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily. | 0.773 |
SHL95504.1 | SHL44277.1 | SAMN05660971_01801 | SAMN05660971_00585 | Putative acetyltransferase. | Transcriptional regulator, XRE family with cupin sensor. | 0.457 |
SHL95504.1 | SHL95400.1 | SAMN05660971_01801 | SAMN05660971_01797 | Putative acetyltransferase. | Transmembrane protein. | 0.471 |
SHL95504.1 | SHL95435.1 | SAMN05660971_01801 | SAMN05660971_01798 | Putative acetyltransferase. | ParD-like antitoxin of type II toxin-antitoxin system. | 0.773 |
SHL95504.1 | SHL95482.1 | SAMN05660971_01801 | SAMN05660971_01800 | Putative acetyltransferase. | Predicted ATPase. | 0.773 |
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