STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SHM01676.1Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family. (422 aa)    
Predicted Functional Partners:
SHM01705.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
   
 0.967
SHM01648.1
Pyrroline-5-carboxylate reductase.
 
   
 0.910
SHM26264.1
Phosphoribulokinase.
 
 
 0.797
SHL69744.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 
 0.732
SHM21122.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 
 0.732
SHM96088.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 
 0.732
SHM54655.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.627
SHM02009.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
  
 0.613
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.566
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.
     
 0.537
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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