STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM01676.1Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family. (422 aa)    
Predicted Functional Partners:
SHM01705.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
   
 0.970
SHM01648.1
Pyrroline-5-carboxylate reductase.
 
   
 0.906
SHM26264.1
Phosphoribulokinase.
 
 
 0.897
SHM94802.1
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.877
SHL69744.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 
 0.869
SHM21122.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 
 0.869
SHM96088.1
Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily.
    
 
 0.869
SHL37421.1
Phosphoglycolate phosphatase.
     
 0.848
SHM02009.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
 
 0.796
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.770
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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