STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM11104.1Transcriptional regulator, LacI family. (337 aa)    
Predicted Functional Partners:
SHM89206.1
Phosphocarrier protein HPr/phosphoenolpyruvate--protein phosphotransferase.
   
 0.939
SHM79403.1
Phosphocarrier protein FPr; Belongs to the PEP-utilizing enzyme family.
   
 
 0.934
SHM87997.1
Glutamate synthase (NADPH) large subunit.
    
 
 0.893
SHM89191.1
PTS system, N-acetylglucosamine-specific IIC component.
    
 0.770
SHM11163.1
3-hydroxyacyl-CoA dehydrogenase.
       0.573
SHM11191.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
   0.557
SHL35085.1
Phosphocarrier protein NPr.
 
 
   0.541
SHM11139.1
Uncharacterized conserved protein, DUF849 family.
       0.514
SHM79347.1
PTS system, fructose-specific IIC component.
     
 0.487
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.478
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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