STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM15367.1H+/Cl-antiporter ClcA. (643 aa)    
Predicted Functional Partners:
SHM15400.1
Putative membrane protein.
  
    0.852
SHM15447.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
       0.832
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.736
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
       0.678
SHM15479.1
Hypothetical protein.
       0.576
SHL40670.1
Sodium/proton antiporter, CPA1 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
  
  
 0.488
SHM89693.1
Helix-turn-helix.
  
     0.485
SHM15543.1
Hypothetical protein.
       0.473
SHL38236.1
Biopolymer transport protein ExbB.
  
     0.458
SHM96568.1
Hypothetical protein.
  
     0.430
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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