Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL37365.1 | SHM24160.1 | SAMN05660971_00348 | SAMN05660971_02508 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.533 |
SHL37365.1 | der | SAMN05660971_00348 | SAMN05660971_02938 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.476 |
SHL37365.1 | rlmL | SAMN05660971_00348 | SAMN05660971_00038 | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.562 |
SHL38353.1 | SHM12733.1 | SAMN05660971_00382 | SAMN05660971_02242 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.920 |
SHL38353.1 | SHM24160.1 | SAMN05660971_00382 | SAMN05660971_02508 | Exodeoxyribonuclease-3. | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.629 |
SHL38353.1 | rlmL | SAMN05660971_00382 | SAMN05660971_00038 | Exodeoxyribonuclease-3. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.558 |
SHM12733.1 | SHL38353.1 | SAMN05660971_02242 | SAMN05660971_00382 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.920 |
SHM12733.1 | SHM24160.1 | SAMN05660971_02242 | SAMN05660971_02508 | Exodeoxyribonuclease-3. | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.629 |
SHM12733.1 | rlmL | SAMN05660971_02242 | SAMN05660971_00038 | Exodeoxyribonuclease-3. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.494 |
SHM24160.1 | SHL37365.1 | SAMN05660971_02508 | SAMN05660971_00348 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA pseudouridine955/2504/2580 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.533 |
SHM24160.1 | SHL38353.1 | SAMN05660971_02508 | SAMN05660971_00382 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease-3. | 0.629 |
SHM24160.1 | SHM12733.1 | SAMN05660971_02508 | SAMN05660971_02242 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease-3. | 0.629 |
SHM24160.1 | SHM24187.1 | SAMN05660971_02508 | SAMN05660971_02509 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.954 |
SHM24160.1 | SHM24220.1 | SAMN05660971_02508 | SAMN05660971_02510 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.911 |
SHM24160.1 | SHM24250.1 | SAMN05660971_02508 | SAMN05660971_02511 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | ATP-dependent helicase IRC3. | 0.727 |
SHM24160.1 | cmk | SAMN05660971_02508 | SAMN05660971_04297 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.872 |
SHM24160.1 | der | SAMN05660971_02508 | SAMN05660971_02938 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.866 |
SHM24160.1 | rlmL | SAMN05660971_02508 | SAMN05660971_00038 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.596 |
SHM24160.1 | rppH | SAMN05660971_02508 | SAMN05660971_01823 | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. | 0.524 |
SHM24187.1 | SHM24160.1 | SAMN05660971_02509 | SAMN05660971_02508 | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.954 |
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