Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHL35230.1 | SHL38898.1 | SAMN05660971_00283 | SAMN05660971_00400 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, NarL family, sensor histidine kinase BarA. | 0.780 |
| SHL35230.1 | SHL66025.1 | SAMN05660971_00283 | SAMN05660971_01075 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase. | 0.503 |
| SHL35230.1 | SHL66095.1 | SAMN05660971_00283 | SAMN05660971_01077 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase. | 0.503 |
| SHL35230.1 | SHL86415.1 | SAMN05660971_00283 | SAMN05660971_01609 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, NarL family, sensor histidine kinase EvgS. | 0.787 |
| SHL35230.1 | SHM07961.1 | SAMN05660971_00283 | SAMN05660971_02083 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL. | 0.773 |
| SHL35230.1 | SHM25864.1 | SAMN05660971_00283 | SAMN05660971_02567 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, NtrC family, response regulator GlrR. | 0.947 |
| SHL35230.1 | SHM25918.1 | SAMN05660971_00283 | SAMN05660971_02569 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, NtrC family, sensor histidine kinase GlrK. | 0.901 |
| SHL35230.1 | SHM27641.1 | SAMN05660971_00283 | SAMN05660971_02635 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PAS domain S-box-containing protein. | 0.808 |
| SHL35230.1 | SHM79457.1 | SAMN05660971_00283 | SAMN05660971_03883 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal transduction histidine kinase. | 0.503 |
| SHL38898.1 | SHL35230.1 | SAMN05660971_00400 | SAMN05660971_00283 | Two-component system, NarL family, sensor histidine kinase BarA. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.780 |
| SHL38898.1 | SHL66025.1 | SAMN05660971_00400 | SAMN05660971_01075 | Two-component system, NarL family, sensor histidine kinase BarA. | Signal transduction histidine kinase. | 0.999 |
| SHL38898.1 | SHL66095.1 | SAMN05660971_00400 | SAMN05660971_01077 | Two-component system, NarL family, sensor histidine kinase BarA. | Signal transduction histidine kinase. | 0.999 |
| SHL38898.1 | SHL86415.1 | SAMN05660971_00400 | SAMN05660971_01609 | Two-component system, NarL family, sensor histidine kinase BarA. | Two-component system, NarL family, sensor histidine kinase EvgS. | 0.999 |
| SHL38898.1 | SHM07961.1 | SAMN05660971_00400 | SAMN05660971_02083 | Two-component system, NarL family, sensor histidine kinase BarA. | Two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL. | 0.858 |
| SHL38898.1 | SHM25864.1 | SAMN05660971_00400 | SAMN05660971_02567 | Two-component system, NarL family, sensor histidine kinase BarA. | Two-component system, NtrC family, response regulator GlrR. | 0.943 |
| SHL38898.1 | SHM25918.1 | SAMN05660971_00400 | SAMN05660971_02569 | Two-component system, NarL family, sensor histidine kinase BarA. | Two-component system, NtrC family, sensor histidine kinase GlrK. | 0.991 |
| SHL38898.1 | SHM27641.1 | SAMN05660971_00400 | SAMN05660971_02635 | Two-component system, NarL family, sensor histidine kinase BarA. | PAS domain S-box-containing protein. | 0.999 |
| SHL38898.1 | SHM79457.1 | SAMN05660971_00400 | SAMN05660971_03883 | Two-component system, NarL family, sensor histidine kinase BarA. | Signal transduction histidine kinase. | 0.999 |
| SHL38898.1 | SHM96159.1 | SAMN05660971_00400 | SAMN05660971_04397 | Two-component system, NarL family, sensor histidine kinase BarA. | Two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB. | 0.959 |
| SHL66025.1 | SHL35230.1 | SAMN05660971_01075 | SAMN05660971_00283 | Signal transduction histidine kinase. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.503 |
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