Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL27956.1 | SHL42136.1 | SAMN05660971_00046 | SAMN05660971_00513 | Alanine-synthesizing transaminase. | Aromatic-amino-acid transaminase. | 0.918 |
SHL27956.1 | SHL70892.1 | SAMN05660971_00046 | SAMN05660971_01245 | Alanine-synthesizing transaminase. | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.908 |
SHL27956.1 | argA | SAMN05660971_00046 | SAMN05660971_02571 | Alanine-synthesizing transaminase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.909 |
SHL27956.1 | argG | SAMN05660971_00046 | SAMN05660971_03142 | Alanine-synthesizing transaminase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.446 |
SHL27956.1 | argJ | SAMN05660971_00046 | SAMN05660971_00333 | Alanine-synthesizing transaminase. | Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.908 |
SHL42136.1 | SHL27956.1 | SAMN05660971_00513 | SAMN05660971_00046 | Aromatic-amino-acid transaminase. | Alanine-synthesizing transaminase. | 0.918 |
SHL42136.1 | SHL70892.1 | SAMN05660971_00513 | SAMN05660971_01245 | Aromatic-amino-acid transaminase. | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.962 |
SHL42136.1 | argA | SAMN05660971_00513 | SAMN05660971_02571 | Aromatic-amino-acid transaminase. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.945 |
SHL42136.1 | argB | SAMN05660971_00513 | SAMN05660971_04032 | Aromatic-amino-acid transaminase. | N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.490 |
SHL42136.1 | argG | SAMN05660971_00513 | SAMN05660971_03142 | Aromatic-amino-acid transaminase. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.922 |
SHL42136.1 | argH | SAMN05660971_00513 | SAMN05660971_03657 | Aromatic-amino-acid transaminase. | Argininosuccinate lyase. | 0.517 |
SHL42136.1 | argJ | SAMN05660971_00513 | SAMN05660971_00333 | Aromatic-amino-acid transaminase. | Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.903 |
SHL70892.1 | SHL27956.1 | SAMN05660971_01245 | SAMN05660971_00046 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Alanine-synthesizing transaminase. | 0.908 |
SHL70892.1 | SHL42136.1 | SAMN05660971_01245 | SAMN05660971_00513 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Aromatic-amino-acid transaminase. | 0.962 |
SHL70892.1 | argA | SAMN05660971_01245 | SAMN05660971_02571 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.942 |
SHL70892.1 | argB | SAMN05660971_01245 | SAMN05660971_04032 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | N-acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.792 |
SHL70892.1 | argD | SAMN05660971_01245 | SAMN05660971_02898 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | acetylornithine/N-succinyldiaminopimelate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.524 |
SHL70892.1 | argG | SAMN05660971_01245 | SAMN05660971_03142 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.447 |
SHL70892.1 | argH | SAMN05660971_01245 | SAMN05660971_03657 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Argininosuccinate lyase. | 0.613 |
SHL70892.1 | argJ | SAMN05660971_01245 | SAMN05660971_00333 | Glutamate dehydrogenase (NADP); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.920 |
page 1 of 5