Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL80167.1 | SHL96678.1 | SAMN05660971_01381 | SAMN05660971_01847 | Tat (twin-arginine translocation) pathway signal sequence. | Copper-resistance protein, CopA family. | 0.762 |
SHL80167.1 | SHM47662.1 | SAMN05660971_01381 | SAMN05660971_03096 | Tat (twin-arginine translocation) pathway signal sequence. | V8-like Glu-specific endopeptidase. | 0.830 |
SHL96678.1 | SHL80167.1 | SAMN05660971_01847 | SAMN05660971_01381 | Copper-resistance protein, CopA family. | Tat (twin-arginine translocation) pathway signal sequence. | 0.762 |
SHL96678.1 | SHM47662.1 | SAMN05660971_01847 | SAMN05660971_03096 | Copper-resistance protein, CopA family. | V8-like Glu-specific endopeptidase. | 0.830 |
SHM35202.1 | SHM47662.1 | SAMN05660971_02792 | SAMN05660971_03096 | Hypothetical protein. | V8-like Glu-specific endopeptidase. | 0.984 |
SHM35202.1 | SHM61338.1 | SAMN05660971_02792 | SAMN05660971_03386 | Hypothetical protein. | Acetyl esterase. | 0.590 |
SHM35202.1 | SHM62441.1 | SAMN05660971_02792 | SAMN05660971_03424 | Hypothetical protein. | Hypothetical protein. | 0.590 |
SHM46744.1 | SHM47662.1 | SAMN05660971_03065 | SAMN05660971_03096 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | V8-like Glu-specific endopeptidase. | 0.865 |
SHM46744.1 | dnaK | SAMN05660971_03065 | SAMN05660971_03615 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.490 |
SHM46744.1 | kdkA | SAMN05660971_03065 | SAMN05660971_02375 | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.653 |
SHM47662.1 | SHL80167.1 | SAMN05660971_03096 | SAMN05660971_01381 | V8-like Glu-specific endopeptidase. | Tat (twin-arginine translocation) pathway signal sequence. | 0.830 |
SHM47662.1 | SHL96678.1 | SAMN05660971_03096 | SAMN05660971_01847 | V8-like Glu-specific endopeptidase. | Copper-resistance protein, CopA family. | 0.830 |
SHM47662.1 | SHM35202.1 | SAMN05660971_03096 | SAMN05660971_02792 | V8-like Glu-specific endopeptidase. | Hypothetical protein. | 0.984 |
SHM47662.1 | SHM46744.1 | SAMN05660971_03096 | SAMN05660971_03065 | V8-like Glu-specific endopeptidase. | VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. | 0.865 |
SHM47662.1 | SHM61338.1 | SAMN05660971_03096 | SAMN05660971_03386 | V8-like Glu-specific endopeptidase. | Acetyl esterase. | 0.694 |
SHM47662.1 | SHM62441.1 | SAMN05660971_03096 | SAMN05660971_03424 | V8-like Glu-specific endopeptidase. | Hypothetical protein. | 0.694 |
SHM47662.1 | dnaJ | SAMN05660971_03096 | SAMN05660971_03614 | V8-like Glu-specific endopeptidase. | Molecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] | 0.562 |
SHM47662.1 | dnaK | SAMN05660971_03096 | SAMN05660971_03615 | V8-like Glu-specific endopeptidase. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.926 |
SHM47662.1 | kdkA | SAMN05660971_03096 | SAMN05660971_02375 | V8-like Glu-specific endopeptidase. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.973 |
SHM47662.1 | ndk | SAMN05660971_03096 | SAMN05660971_02930 | V8-like Glu-specific endopeptidase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.876 |
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