Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL38353.1 | SHL77786.1 | SAMN05660971_00382 | SAMN05660971_01303 | Exodeoxyribonuclease-3. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.918 |
SHL38353.1 | SHM12733.1 | SAMN05660971_00382 | SAMN05660971_02242 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.920 |
SHL38353.1 | metG | SAMN05660971_00382 | SAMN05660971_03151 | Exodeoxyribonuclease-3. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.521 |
SHL38353.1 | nth | SAMN05660971_00382 | SAMN05660971_03149 | Exodeoxyribonuclease-3. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.940 |
SHL38353.1 | polA | SAMN05660971_00382 | SAMN05660971_01515 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.939 |
SHL38353.1 | ung | SAMN05660971_00382 | SAMN05660971_00576 | Exodeoxyribonuclease-3. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.864 |
SHL77786.1 | SHL38353.1 | SAMN05660971_01303 | SAMN05660971_00382 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease-3. | 0.918 |
SHL77786.1 | SHM12733.1 | SAMN05660971_01303 | SAMN05660971_02242 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Exodeoxyribonuclease-3. | 0.917 |
SHL77786.1 | mutM | SAMN05660971_01303 | SAMN05660971_04039 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.452 |
SHL77786.1 | nth | SAMN05660971_01303 | SAMN05660971_03149 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.705 |
SHL77786.1 | polA | SAMN05660971_01303 | SAMN05660971_01515 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.462 |
SHL77786.1 | ung | SAMN05660971_01303 | SAMN05660971_00576 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.436 |
SHM12733.1 | SHL38353.1 | SAMN05660971_02242 | SAMN05660971_00382 | Exodeoxyribonuclease-3. | Exodeoxyribonuclease-3. | 0.920 |
SHM12733.1 | SHL77786.1 | SAMN05660971_02242 | SAMN05660971_01303 | Exodeoxyribonuclease-3. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.917 |
SHM12733.1 | metG | SAMN05660971_02242 | SAMN05660971_03151 | Exodeoxyribonuclease-3. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.521 |
SHM12733.1 | nth | SAMN05660971_02242 | SAMN05660971_03149 | Exodeoxyribonuclease-3. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.985 |
SHM12733.1 | polA | SAMN05660971_02242 | SAMN05660971_01515 | Exodeoxyribonuclease-3. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.930 |
SHM12733.1 | ung | SAMN05660971_02242 | SAMN05660971_00576 | Exodeoxyribonuclease-3. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.864 |
SHM52042.1 | SHM52120.1 | SAMN05660971_03150 | SAMN05660971_03153 | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | Hypothetical protein. | 0.664 |
SHM52042.1 | metG | SAMN05660971_03150 | SAMN05660971_03151 | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.908 |
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