STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM59633.1Hypothetical protein. (304 aa)    
Predicted Functional Partners:
SHM59605.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
     0.864
SHM59577.1
AraC-type DNA-binding protein.
 
    0.632
SHL71621.1
Outer membrane receptor for ferrienterochelin and colicins.
 
  
 0.610
SHL96989.1
Sucrose phosphorylase.
    
  0.493
SHM83227.1
Carbohydrate binding module (family 35).
  
     0.444
SHM59659.1
Carbon starvation protein CstA.
       0.434
coaX
Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
 
     0.419
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.