STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM62731.1Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (489 aa)    
Predicted Functional Partners:
SHL65807.1
Choline dehydrogenase.
   
 
 0.938
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
   
 
 0.922
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
  
 
0.914
SHM44855.1
Acyl transferase domain-containing protein.
  
 0.883
SHL69462.1
Aldehyde dehydrogenase family protein.
  
  
  0.876
SHM62766.1
Predicted amidohydrolase.
  
  0.815
SHM62795.1
Putative hydroxymethylpyrimidine transporter CytX; Belongs to the purine-cytosine permease (2.A.39) family.
       0.783
SHM87997.1
Glutamate synthase (NADPH) large subunit.
  
 
 0.747
SHM62914.1
Agmatinase; Belongs to the arginase family.
  
 
  0.681
SHM62886.1
Nucleoside recognition GATE domain-containing membrane protein YjiH.
       0.673
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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