STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM65275.1Type IV pilus assembly protein PilV. (136 aa)    
Predicted Functional Partners:
SHM65251.1
Type IV pilus assembly protein PilE.
 
  
 0.987
SHM65316.1
Hypothetical protein.
       0.774
SHM65296.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.773
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.719
SHM65206.1
FKBP-type peptidyl-prolyl cis-trans isomerase SlpA.
       0.649
SHM65336.1
Type IV fimbrial biogenesis protein FimT.
  
  
 0.638
SHM90089.1
Protein of unknown function.
  
     0.619
SHM87906.1
Pilus assembly protein, PilP.
  
  
 0.593
SHM01365.1
Protein of unknown function.
  
     0.584
SHL37097.1
Competence protein ComEC.
     
 0.547
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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