Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL30644.1 | lysA | SAMN05660971_00142 | SAMN05660971_03659 | Modulator of drug activity B. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.764 |
SHL67828.1 | dapF | SAMN05660971_01134 | SAMN05660971_03660 | Carboxynorspermidine dehydrogenase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.491 |
SHL67828.1 | lysA | SAMN05660971_01134 | SAMN05660971_03659 | Carboxynorspermidine dehydrogenase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.919 |
SHL67828.1 | murE | SAMN05660971_01134 | SAMN05660971_00318 | Carboxynorspermidine dehydrogenase. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.474 |
SHM01074.1 | argG | SAMN05660971_02006 | SAMN05660971_03142 | Aspartate kinase; Belongs to the aspartokinase family. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.937 |
SHM01074.1 | argH | SAMN05660971_02006 | SAMN05660971_03657 | Aspartate kinase; Belongs to the aspartokinase family. | Argininosuccinate lyase. | 0.454 |
SHM01074.1 | dapB | SAMN05660971_02006 | SAMN05660971_03605 | Aspartate kinase; Belongs to the aspartokinase family. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.885 |
SHM01074.1 | dapF | SAMN05660971_02006 | SAMN05660971_03660 | Aspartate kinase; Belongs to the aspartokinase family. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.890 |
SHM01074.1 | lysA | SAMN05660971_02006 | SAMN05660971_03659 | Aspartate kinase; Belongs to the aspartokinase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.826 |
SHM01074.1 | murE | SAMN05660971_02006 | SAMN05660971_00318 | Aspartate kinase; Belongs to the aspartokinase family. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.841 |
SHM70428.1 | SHM70528.1 | SAMN05660971_03658 | SAMN05660971_03661 | Predicted small lipoprotein YifL. | Hypothetical protein. | 0.552 |
SHM70428.1 | argH | SAMN05660971_03658 | SAMN05660971_03657 | Predicted small lipoprotein YifL. | Argininosuccinate lyase. | 0.874 |
SHM70428.1 | dapF | SAMN05660971_03658 | SAMN05660971_03660 | Predicted small lipoprotein YifL. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.880 |
SHM70428.1 | lysA | SAMN05660971_03658 | SAMN05660971_03659 | Predicted small lipoprotein YifL. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.874 |
SHM70528.1 | SHM70428.1 | SAMN05660971_03661 | SAMN05660971_03658 | Hypothetical protein. | Predicted small lipoprotein YifL. | 0.552 |
SHM70528.1 | argH | SAMN05660971_03661 | SAMN05660971_03657 | Hypothetical protein. | Argininosuccinate lyase. | 0.593 |
SHM70528.1 | dapF | SAMN05660971_03661 | SAMN05660971_03660 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.940 |
SHM70528.1 | lysA | SAMN05660971_03661 | SAMN05660971_03659 | Hypothetical protein. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.781 |
argG | SHM01074.1 | SAMN05660971_03142 | SAMN05660971_02006 | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Aspartate kinase; Belongs to the aspartokinase family. | 0.937 |
argG | argH | SAMN05660971_03142 | SAMN05660971_03657 | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | Argininosuccinate lyase. | 0.999 |
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