STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM76908.12-keto-3-deoxygalactonate kinase. (302 aa)    
Predicted Functional Partners:
SHM76943.1
2-keto-3-deoxy-phosphogalactonate aldolase.
 
  
 0.998
SHM63154.1
Galactonate dehydratase.
 
 
 0.979
SHM80103.1
Mannonate dehydratase.
 
 
 0.826
SHM01726.1
L-alanine-DL-glutamate epimerase.
 
 
 0.805
SHM63128.1
Sugar lactone lactonase YvrE.
 
     0.685
SHL39607.1
Altronate hydrolase.
  
  
  0.643
SHL98316.1
2-keto-3-deoxy-phosphogluconate aldolase.
    
 0.566
SHM76976.1
Tripartite ATP-independent transporter, DctM component.
       0.533
SHM50898.1
D-galactose 1-dehydrogenase.
 
     0.523
SHM63183.1
DNA-binding transcriptional regulator, FadR family.
 
     0.491
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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