STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM78517.1Transcriptional regulator, AsnC family. (159 aa)    
Predicted Functional Partners:
SHM78492.1
Aspartate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.808
SHM78546.1
N-alpha-acetyl-L-2,4-diaminobutyrate deacetylase.
     
 0.750
SHL42481.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.696
SHM78571.1
Ectoine hydrolase.
 
 
 
 0.680
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
   
 
 0.575
SHM78467.1
L-2,4-diaminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.512
SHM87997.1
Glutamate synthase (NADPH) large subunit.
     
 0.510
SHM76077.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.499
SHM46230.1
Xaa-Pro dipeptidase.
 
 
 
 0.483
SHM78439.1
Threonine dehydratase.
 
   
 0.411
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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