STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM80008.1TRAP transporter, DctM subunit. (426 aa)    
Predicted Functional Partners:
SHM80028.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.991
SHM80052.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  0.988
SHL29790.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.773
SHM79982.1
Fructuronate reductase; Belongs to the mannitol dehydrogenase family.
       0.773
SHM93889.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.771
SHL84333.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.766
SHL45433.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.761
SHM11282.1
Tripartite ATP-independent transporter solute receptor, DctP family.
    0.759
SHM12395.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.759
SHM17427.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.755
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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