STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM83176.1AraC-type DNA-binding protein. (260 aa)    
Predicted Functional Partners:
SHM93263.1
Helix-turn-helix domain-containing protein.
  
   0.786
SHL40132.1
AraC-type DNA-binding protein.
  
   0.742
SHL30487.1
AraC-type DNA-binding protein.
  
     0.673
SHL70859.1
AraC-type DNA-binding protein.
  
     0.672
SHM87997.1
Glutamate synthase (NADPH) large subunit.
    
  0.640
SHM41639.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.632
SHM54449.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.578
SHM51267.1
Transcriptional regulator, AraC family with amidase-like domain.
  
   0.545
SHL82510.1
AraC-type DNA-binding protein.
  
     0.520
SHM83066.1
Ornithine cyclodeaminase.
       0.502
Your Current Organism:
Halomonas cupida
NCBI taxonomy Id: 44933
Other names: ATCC 27124, Alcaligenes cupidus, CCUG 16075, CIP 103199, DSM 4740, Deleya cupida, H. cupida, JCM 20632, LMG 3448, LMG:3448, NBRC 102219, strain 79
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.