Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHL36205.1 | SHM87810.1 | SAMN05660971_00312 | SAMN05660971_04145 | Hypothetical protein. | Penicillin-binding protein 1A. | 0.906 |
| SHM16910.1 | SHM87810.1 | SAMN05660971_02389 | SAMN05660971_04145 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | Penicillin-binding protein 1A. | 0.710 |
| SHM16910.1 | mtgA | SAMN05660971_02389 | SAMN05660971_01951 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.542 |
| SHM31413.1 | SHM87810.1 | SAMN05660971_02660 | SAMN05660971_04145 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | Penicillin-binding protein 1A. | 0.916 |
| SHM31413.1 | ftsI | SAMN05660971_02660 | SAMN05660971_00317 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.549 |
| SHM31413.1 | mrdB | SAMN05660971_02660 | SAMN05660971_02663 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.783 |
| SHM31413.1 | mtgA | SAMN05660971_02660 | SAMN05660971_01951 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.761 |
| SHM35176.1 | SHM87810.1 | SAMN05660971_02791 | SAMN05660971_04145 | Penicillin-binding protein 1C. | Penicillin-binding protein 1A. | 0.825 |
| SHM35176.1 | mtgA | SAMN05660971_02791 | SAMN05660971_01951 | Penicillin-binding protein 1C. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.571 |
| SHM87810.1 | SHL36205.1 | SAMN05660971_04145 | SAMN05660971_00312 | Penicillin-binding protein 1A. | Hypothetical protein. | 0.906 |
| SHM87810.1 | SHM16910.1 | SAMN05660971_04145 | SAMN05660971_02389 | Penicillin-binding protein 1A. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.710 |
| SHM87810.1 | SHM31413.1 | SAMN05660971_04145 | SAMN05660971_02660 | Penicillin-binding protein 1A. | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family. | 0.916 |
| SHM87810.1 | SHM35176.1 | SAMN05660971_04145 | SAMN05660971_02791 | Penicillin-binding protein 1A. | Penicillin-binding protein 1C. | 0.825 |
| SHM87810.1 | SHM87833.1 | SAMN05660971_04145 | SAMN05660971_04146 | Penicillin-binding protein 1A. | Type IV pilus assembly protein PilM. | 0.777 |
| SHM87810.1 | SHM87925.1 | SAMN05660971_04145 | SAMN05660971_04150 | Penicillin-binding protein 1A. | Type IV pilus assembly protein PilQ. | 0.784 |
| SHM87810.1 | aroK | SAMN05660971_04145 | SAMN05660971_04151 | Penicillin-binding protein 1A. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.728 |
| SHM87810.1 | ftsI | SAMN05660971_04145 | SAMN05660971_00317 | Penicillin-binding protein 1A. | Cell division protein FtsI (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.772 |
| SHM87810.1 | mrdB | SAMN05660971_04145 | SAMN05660971_02663 | Penicillin-binding protein 1A. | Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.722 |
| SHM87810.1 | mtgA | SAMN05660971_04145 | SAMN05660971_01951 | Penicillin-binding protein 1A. | Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. | 0.774 |
| SHM87833.1 | SHM87810.1 | SAMN05660971_04146 | SAMN05660971_04145 | Type IV pilus assembly protein PilM. | Penicillin-binding protein 1A. | 0.777 |
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