Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHM89983.1 | rplC | SAMN05660971_04210 | SAMN05660971_03340 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.879 |
| SHM89983.1 | rplD | SAMN05660971_04210 | SAMN05660971_03341 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.886 |
| SHM89983.1 | rplF | SAMN05660971_04210 | SAMN05660971_03355 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.885 |
| SHM89983.1 | rplM | SAMN05660971_04210 | SAMN05660971_00302 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.878 |
| SHM89983.1 | rplR | SAMN05660971_04210 | SAMN05660971_03356 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.875 |
| SHM89983.1 | rplT | SAMN05660971_04210 | SAMN05660971_00747 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.877 |
| SHM89983.1 | rplU | SAMN05660971_04210 | SAMN05660971_03529 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.884 |
| SHM89983.1 | rpmH | SAMN05660971_04210 | SAMN05660971_02357 | ATP-binding cassette, subfamily F, uup. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.875 |
| SHM89983.1 | rpsC | SAMN05660971_04210 | SAMN05660971_03346 | ATP-binding cassette, subfamily F, uup. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.878 |
| SHM89983.1 | rpsO | SAMN05660971_04210 | SAMN05660971_03586 | ATP-binding cassette, subfamily F, uup. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.878 |
| rplC | SHM89983.1 | SAMN05660971_03340 | SAMN05660971_04210 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | ATP-binding cassette, subfamily F, uup. | 0.879 |
| rplC | rplD | SAMN05660971_03340 | SAMN05660971_03341 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplC | rplF | SAMN05660971_03340 | SAMN05660971_03355 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
| rplC | rplM | SAMN05660971_03340 | SAMN05660971_00302 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplR | SAMN05660971_03340 | SAMN05660971_03356 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplC | rplT | SAMN05660971_03340 | SAMN05660971_00747 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.998 |
| rplC | rplU | SAMN05660971_03340 | SAMN05660971_03529 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplC | rpmH | SAMN05660971_03340 | SAMN05660971_02357 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.982 |
| rplC | rpsC | SAMN05660971_03340 | SAMN05660971_03346 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplC | rpsO | SAMN05660971_03340 | SAMN05660971_03586 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.997 |
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