C2G38_2235600 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2235600

DNA polymerase. (740 aa)

Predicted Functional Partners:

C2G38_1128270

0.959

C2G38_2079577

0.794

C2G38_2110396

0.790

C2G38_2005704

0.790

C2G38_2194622

0.789

C2G38_2046720

0.751

C2G38_2090092

0.746

C2G38_2183709

0.746

C2G38_1996043

0.746

C2G38_2049696

0.737

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1128270	C2G38_2049696	A0A397VH85	A0A397TZS8	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.835
C2G38_1128270	C2G38_2079577	A0A397VH85	A0A397VGG4	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	Translation protein SH3-like domain-containing protein.	0.997
C2G38_1128270	C2G38_2235600	A0A397VH85	A0A397TQC8	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	DNA polymerase.	0.959
C2G38_1996043	C2G38_2079577	A0A397W5I5	A0A397VGG4	Glycoside Hydrolase Family 31 protein; Belongs to the glycosyl hydrolase 31 family.	Translation protein SH3-like domain-containing protein.	0.471
C2G38_1996043	C2G38_2235600	A0A397W5I5	A0A397TQC8	Glycoside Hydrolase Family 31 protein; Belongs to the glycosyl hydrolase 31 family.	DNA polymerase.	0.746
C2G38_2005704	C2G38_2046720	A0A397UJS0	A0A397UCQ1	RNase P subunit p30-domain-containing protein.	Uncharacterized protein.	0.996
C2G38_2005704	C2G38_2049696	A0A397UJS0	A0A397TZS8	RNase P subunit p30-domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.978
C2G38_2005704	C2G38_2110396	A0A397UJS0	A0A397UIX8	RNase P subunit p30-domain-containing protein.	Rof/RNase P-like protein.	0.997
C2G38_2005704	C2G38_2194622	A0A397UJS0	A0A397V0T1	RNase P subunit p30-domain-containing protein.	Alba domain-containing protein.	0.991
C2G38_2005704	C2G38_2235600	A0A397UJS0	A0A397TQC8	RNase P subunit p30-domain-containing protein.	DNA polymerase.	0.790
C2G38_2046720	C2G38_2005704	A0A397UCQ1	A0A397UJS0	Uncharacterized protein.	RNase P subunit p30-domain-containing protein.	0.996
C2G38_2046720	C2G38_2049696	A0A397UCQ1	A0A397TZS8	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.947
C2G38_2046720	C2G38_2110396	A0A397UCQ1	A0A397UIX8	Uncharacterized protein.	Rof/RNase P-like protein.	0.996
C2G38_2046720	C2G38_2194622	A0A397UCQ1	A0A397V0T1	Uncharacterized protein.	Alba domain-containing protein.	0.975
C2G38_2046720	C2G38_2235600	A0A397UCQ1	A0A397TQC8	Uncharacterized protein.	DNA polymerase.	0.751
C2G38_2049696	C2G38_1128270	A0A397TZS8	A0A397VH85	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Ribosomal protein L10e/L16; Belongs to the universal ribosomal protein uL16 family.	0.835
C2G38_2049696	C2G38_2005704	A0A397TZS8	A0A397UJS0	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	RNase P subunit p30-domain-containing protein.	0.978
C2G38_2049696	C2G38_2046720	A0A397TZS8	A0A397UCQ1	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Uncharacterized protein.	0.947
C2G38_2049696	C2G38_2079577	A0A397TZS8	A0A397VGG4	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Translation protein SH3-like domain-containing protein.	0.887
C2G38_2049696	C2G38_2110396	A0A397TZS8	A0A397UIX8	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	Rof/RNase P-like protein.	0.970