C2G38_1879427 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_1879427

Kinase-like domain-containing protein. (126 aa)

Predicted Functional Partners:

C2G38_2290825

0.902

C2G38_552680

0.902

C2G38_2097416

0.900

C2G38_2144739

0.887

C2G38_2138460

0.858

C2G38_1987452

0.845

C2G38_2152542

0.749

C2G38_1971167

0.748

C2G38_2130984

0.670

C2G38_62160

0.664

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1879427	C2G38_1971167	A0A397TR14	A0A397V0D3	Kinase-like domain-containing protein.	Rap-GAP domain-containing protein.	0.748
C2G38_1879427	C2G38_1987452	A0A397TR14	A0A397UDF4	Kinase-like domain-containing protein.	Secretory pathway protein Sec39-domain-containing protein.	0.845
C2G38_1879427	C2G38_2097416	A0A397TR14	A0A397UUA2	Kinase-like domain-containing protein.	Longin-like domain-containing protein; Belongs to the synaptobrevin family.	0.900
C2G38_1879427	C2G38_2130984	A0A397TR14	A0A397W948	Kinase-like domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.670
C2G38_1879427	C2G38_2138460	A0A397TR14	A0A397VW92	Kinase-like domain-containing protein.	Centromere/kinetochore Zw10-domain-containing protein.	0.858
C2G38_1879427	C2G38_2144739	A0A397TR14	A0A397UZQ8	Kinase-like domain-containing protein.	TIP-1 family-domain-containing protein.	0.887
C2G38_1879427	C2G38_2152542	A0A397TR14	A0A397W772	Kinase-like domain-containing protein.	BZIP domain-containing protein.	0.749
C2G38_1879427	C2G38_2290825	A0A397TR14	A0A397U0N0	Kinase-like domain-containing protein.	Snare-complex protein syntaxin-18 N-terminus-domain-containing protein.	0.902
C2G38_1879427	C2G38_552680	A0A397TR14	A0A397UFP6	Kinase-like domain-containing protein.	Vesicle transport protein.	0.902
C2G38_1879427	C2G38_62160	A0A397TR14	A0A397UP61	Kinase-like domain-containing protein.	Uncharacterized protein.	0.664
C2G38_1971167	C2G38_1879427	A0A397V0D3	A0A397TR14	Rap-GAP domain-containing protein.	Kinase-like domain-containing protein.	0.748
C2G38_1971167	C2G38_62160	A0A397V0D3	A0A397UP61	Rap-GAP domain-containing protein.	Uncharacterized protein.	0.449
C2G38_1987452	C2G38_1879427	A0A397UDF4	A0A397TR14	Secretory pathway protein Sec39-domain-containing protein.	Kinase-like domain-containing protein.	0.845
C2G38_1987452	C2G38_2097416	A0A397UDF4	A0A397UUA2	Secretory pathway protein Sec39-domain-containing protein.	Longin-like domain-containing protein; Belongs to the synaptobrevin family.	0.949
C2G38_1987452	C2G38_2130984	A0A397UDF4	A0A397W948	Secretory pathway protein Sec39-domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.951
C2G38_1987452	C2G38_2138460	A0A397UDF4	A0A397VW92	Secretory pathway protein Sec39-domain-containing protein.	Centromere/kinetochore Zw10-domain-containing protein.	0.994
C2G38_1987452	C2G38_2144739	A0A397UDF4	A0A397UZQ8	Secretory pathway protein Sec39-domain-containing protein.	TIP-1 family-domain-containing protein.	0.997
C2G38_1987452	C2G38_2290825	A0A397UDF4	A0A397U0N0	Secretory pathway protein Sec39-domain-containing protein.	Snare-complex protein syntaxin-18 N-terminus-domain-containing protein.	0.987
C2G38_1987452	C2G38_552680	A0A397UDF4	A0A397UFP6	Secretory pathway protein Sec39-domain-containing protein.	Vesicle transport protein.	0.984
C2G38_2097416	C2G38_1879427	A0A397UUA2	A0A397TR14	Longin-like domain-containing protein; Belongs to the synaptobrevin family.	Kinase-like domain-containing protein.	0.900