Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
C2G38_1057520Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (457 aa)    
Predicted Functional Partners:
C2G38_1697761
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.955
C2G38_2081650
Histone H2A; Belongs to the histone H2A family.
   
 0.954
C2G38_770948
WD40-repeat-containing domain protein.
   
 0.940
C2G38_2036687
WD40-repeat-containing domain protein.
    
 0.933
C2G38_714288
Sds3-like-domain-containing protein.
    
 0.932
C2G38_2060455
SANT domain-containing protein.
    
 0.929
C2G38_2003874
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.922
C2G38_1979696
HDAC_interact domain-containing protein.
   
 0.920
C2G38_1268315
JmjC domain-containing protein.
    
 0.910
C2G38_1673467
Uncharacterized protein.
   
 0.905
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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