Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
C2G38_1026810Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (993 aa)    
Predicted Functional Partners:
C2G38_2020608
Protein transport protein SEC24.
   
 0.987
C2G38_2003608
WD_REPEATS_REGION domain-containing protein.
   
 0.987
C2G38_2100481
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.986
C2G38_2100672
Small COPII coat GTPase sar1; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.986
C2G38_1967951
Sec23/Sec24 trunk domain-containing protein.
   
 0.986
C2G38_2110749
WD40 repeat-like protein; Belongs to the WD repeat SEC13 family.
    
 0.985
C2G38_2034497
WD40-repeat-containing domain protein.
   
 
 0.935
C2G38_2131860
Uncharacterized protein.
   
 
 0.858
C2G38_2097416
Longin-like domain-containing protein; Belongs to the synaptobrevin family.
     
 0.852
C2G38_2119654
t-SNARE.
   
 
 0.838
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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