C2G38_2230616 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2230616

CLP1_P domain-containing protein. (588 aa)

Predicted Functional Partners:

C2G38_2037791

0.994

C2G38_196656

0.984

C2G38_642291

0.968

C2G38_1957660

0.968

YTM1

0.907

C2G38_736465

0.903

C2G38_736329

0.903

ERB1

0.884

C2G38_652266

0.838

C2G38_2112874

0.838

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1957660	C2G38_196656	A0A397VQ50	A0A397UJ84	Las1-like-domain-containing protein.	Ipi1_N domain-containing protein.	0.957
C2G38_1957660	C2G38_2037791	A0A397VQ50	A0A397V7M7	Las1-like-domain-containing protein.	WD40-repeat-containing domain protein.	0.974
C2G38_1957660	C2G38_2112874	A0A397VQ50	A0A397UK59	Las1-like-domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.776
C2G38_1957660	C2G38_2230616	A0A397VQ50	A0A397TTP4	Las1-like-domain-containing protein.	CLP1_P domain-containing protein.	0.968
C2G38_1957660	C2G38_652266	A0A397VQ50	A0A397UCF5	Las1-like-domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.776
C2G38_1957660	C2G38_736329	A0A397VQ50	A0A397U9T5	Las1-like-domain-containing protein.	XRN_M domain-containing protein.	0.772
C2G38_1957660	C2G38_736465	A0A397VQ50	A0A397U0Q9	Las1-like-domain-containing protein.	Putative 5-3 exonuclease.	0.772
C2G38_1957660	ERB1	A0A397VQ50	A0A397V0T6	Las1-like-domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.896
C2G38_1957660	YTM1	A0A397VQ50	A0A397TTF2	Las1-like-domain-containing protein.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.814
C2G38_196656	C2G38_1957660	A0A397UJ84	A0A397VQ50	Ipi1_N domain-containing protein.	Las1-like-domain-containing protein.	0.957
C2G38_196656	C2G38_2037791	A0A397UJ84	A0A397V7M7	Ipi1_N domain-containing protein.	WD40-repeat-containing domain protein.	0.998
C2G38_196656	C2G38_2112874	A0A397UJ84	A0A397UK59	Ipi1_N domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.902
C2G38_196656	C2G38_2230616	A0A397UJ84	A0A397TTP4	Ipi1_N domain-containing protein.	CLP1_P domain-containing protein.	0.984
C2G38_196656	C2G38_642291	A0A397UJ84	A0A397VQ25	Ipi1_N domain-containing protein.	Uncharacterized protein.	0.935
C2G38_196656	C2G38_652266	A0A397UJ84	A0A397UCF5	Ipi1_N domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.902
C2G38_196656	ERB1	A0A397UJ84	A0A397V0T6	Ipi1_N domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.845
C2G38_196656	YTM1	A0A397UJ84	A0A397TTF2	Ipi1_N domain-containing protein.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.873
C2G38_2037791	C2G38_1957660	A0A397V7M7	A0A397VQ50	WD40-repeat-containing domain protein.	Las1-like-domain-containing protein.	0.974
C2G38_2037791	C2G38_196656	A0A397V7M7	A0A397UJ84	WD40-repeat-containing domain protein.	Ipi1_N domain-containing protein.	0.998
C2G38_2037791	C2G38_2112874	A0A397V7M7	A0A397UK59	WD40-repeat-containing domain protein.	ULP_PROTEASE domain-containing protein.	0.902