C2G38_2256249 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2256249

Alkaline-phosphatase-like protein. (983 aa)

Predicted Functional Partners:

C2G38_2033668

0.993

C2G38_2131850

0.984

C2G38_2230788

0.982

C2G38_2199997

0.982

C2G38_2076218

0.982

C2G38_1964643

0.982

C2G38_1993048

0.963

C2G38_2008193

0.929

C2G38_2253018

0.921

C2G38_1781783

0.921

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1781783	C2G38_1993048	A0A397UVT4	A0A397TU71	Glycosyl hydrolases family 31 protein; Belongs to the glycosyl hydrolase 31 family.	Uncharacterized protein.	0.531
C2G38_1781783	C2G38_2256249	A0A397UVT4	A0A397TU11	Glycosyl hydrolases family 31 protein; Belongs to the glycosyl hydrolase 31 family.	Alkaline-phosphatase-like protein.	0.921
C2G38_1964643	C2G38_1993048	A0A397VJ30	A0A397TU71	Uncharacterized protein.	Uncharacterized protein.	0.958
C2G38_1964643	C2G38_2008193	A0A397VJ30	A0A397U3D3	Uncharacterized protein.	GPI transamidase component PIG-T.	0.913
C2G38_1964643	C2G38_2033668	A0A397VJ30	A0A397VIK9	Uncharacterized protein.	GPI biosynthesis protein family Pig-F-domain-containing protein.	0.503
C2G38_1964643	C2G38_2076218	A0A397VJ30	A0A397VI85	Uncharacterized protein.	Oxidoreductase.	0.809
C2G38_1964643	C2G38_2131850	A0A397VJ30	A0A397V7W1	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.938
C2G38_1964643	C2G38_2199997	A0A397VJ30	A0A397USW1	Uncharacterized protein.	Oxidoreductase.	0.809
C2G38_1964643	C2G38_2230788	A0A397VJ30	A0A397TUG0	Uncharacterized protein.	Oxidoreductase.	0.809
C2G38_1964643	C2G38_2253018	A0A397VJ30	A0A397U9F6	Uncharacterized protein.	Gaa1-like protein.	0.818
C2G38_1964643	C2G38_2256249	A0A397VJ30	A0A397TU11	Uncharacterized protein.	Alkaline-phosphatase-like protein.	0.982
C2G38_1993048	C2G38_1781783	A0A397TU71	A0A397UVT4	Uncharacterized protein.	Glycosyl hydrolases family 31 protein; Belongs to the glycosyl hydrolase 31 family.	0.531
C2G38_1993048	C2G38_1964643	A0A397TU71	A0A397VJ30	Uncharacterized protein.	Uncharacterized protein.	0.958
C2G38_1993048	C2G38_2008193	A0A397TU71	A0A397U3D3	Uncharacterized protein.	GPI transamidase component PIG-T.	0.846
C2G38_1993048	C2G38_2033668	A0A397TU71	A0A397VIK9	Uncharacterized protein.	GPI biosynthesis protein family Pig-F-domain-containing protein.	0.988
C2G38_1993048	C2G38_2076218	A0A397TU71	A0A397VI85	Uncharacterized protein.	Oxidoreductase.	0.958
C2G38_1993048	C2G38_2131850	A0A397TU71	A0A397V7W1	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.944
C2G38_1993048	C2G38_2199997	A0A397TU71	A0A397USW1	Uncharacterized protein.	Oxidoreductase.	0.958
C2G38_1993048	C2G38_2230788	A0A397TU71	A0A397TUG0	Uncharacterized protein.	Oxidoreductase.	0.958
C2G38_1993048	C2G38_2253018	A0A397TU71	A0A397U9F6	Uncharacterized protein.	Gaa1-like protein.	0.859