C2G38_2150197 protein (Gigaspora rosea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C2G38_2150197

Putative glutamyltRNA amidotransferase subunit A. (434 aa)

Predicted Functional Partners:

C2G38_2146904

0.988

C2G38_1971213

0.848

C2G38_2198179

0.826

C2G38_1963690

0.798

C2G38_2136986

0.762

C2G38_2249130

0.711

C2G38_2142613

0.711

C2G38_1978818

0.708

C2G38_2069579

0.708

C2G38_2113865

0.692

Your Current Organism:

Gigaspora rosea

NCBI taxonomy Id: 44941
Other names: G. rosea

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C2G38_1963690	C2G38_1971213	A0A397VDT7	A0A397V933	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA synthetases class II-domain-containing protein.	0.856
C2G38_1963690	C2G38_2069579	A0A397VDT7	A0A397VS61	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.995
C2G38_1963690	C2G38_2113865	A0A397VDT7	A0A397UAS5	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Aspartyl-tRNA synthetase.	0.988
C2G38_1963690	C2G38_2136986	A0A397VDT7	A0A397W382	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.612
C2G38_1963690	C2G38_2142613	A0A397VDT7	A0A397V6Z4	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Protein kinase domain-containing protein.	0.865
C2G38_1963690	C2G38_2146904	A0A397VDT7	A0A397UEM1	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.	0.957
C2G38_1963690	C2G38_2150197	A0A397VDT7	A0A397TV52	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Putative glutamyltRNA amidotransferase subunit A.	0.798
C2G38_1963690	C2G38_2198179	A0A397VDT7	A0A397USV3	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.843
C2G38_1963690	C2G38_2249130	A0A397VDT7	A0A397UT50	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	Asparaginyl-tRNA synthetase.	0.865
C2G38_1971213	C2G38_1963690	A0A397V933	A0A397VDT7	tRNA synthetases class II-domain-containing protein.	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.856
C2G38_1971213	C2G38_1978818	A0A397V933	A0A397UQN2	tRNA synthetases class II-domain-containing protein.	Cytosolic 60S large ribosomal protein L39.	0.752
C2G38_1971213	C2G38_2069579	A0A397V933	A0A397VS61	tRNA synthetases class II-domain-containing protein.	tRNA synthetases class I, catalytic domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.752
C2G38_1971213	C2G38_2113865	A0A397V933	A0A397UAS5	tRNA synthetases class II-domain-containing protein.	Aspartyl-tRNA synthetase.	0.870
C2G38_1971213	C2G38_2136986	A0A397V933	A0A397W382	tRNA synthetases class II-domain-containing protein.	Glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.895
C2G38_1971213	C2G38_2142613	A0A397V933	A0A397V6Z4	tRNA synthetases class II-domain-containing protein.	Protein kinase domain-containing protein.	0.788
C2G38_1971213	C2G38_2146904	A0A397V933	A0A397UEM1	tRNA synthetases class II-domain-containing protein.	Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.	0.988
C2G38_1971213	C2G38_2150197	A0A397V933	A0A397TV52	tRNA synthetases class II-domain-containing protein.	Putative glutamyltRNA amidotransferase subunit A.	0.848
C2G38_1971213	C2G38_2249130	A0A397V933	A0A397UT50	tRNA synthetases class II-domain-containing protein.	Asparaginyl-tRNA synthetase.	0.788
C2G38_1978818	C2G38_1971213	A0A397UQN2	A0A397V933	Cytosolic 60S large ribosomal protein L39.	tRNA synthetases class II-domain-containing protein.	0.752
C2G38_1978818	C2G38_2113865	A0A397UQN2	A0A397UAS5	Cytosolic 60S large ribosomal protein L39.	Aspartyl-tRNA synthetase.	0.721