Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C2G38_2149988Matrin-type domain-containing protein. (266 aa)    
Predicted Functional Partners:
C2G38_2068073
Nop domain-containing protein.
    
 0.953
C2G38_2231741
U1-type domain-containing protein.
   
 0.949
C2G38_1987308
PRP1 splicing factor, N-terminal-domain-containing protein.
   
 0.931
C2G38_2169978
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
  0.912
C2G38_2067779
WD40-repeat-containing domain protein.
    
 0.905
C2G38_2248134
Splicing factor, Prp19-binding domain-containing protein.
   
 0.902
C2G38_829332
Ubiquitin-related domain-containing protein.
    
  0.881
C2G38_2165966
RED-like protein N-terminal region-domain-containing protein.
    
  0.881
C2G38_2156242
Sec63 Brl domain-containing protein.
    
 
 0.876
C2G38_2029301
Small nuclear ribonucleoprotein-associated protein.
    
 
 0.853
Your Current Organism:
Gigaspora rosea
NCBI taxonomy Id: 44941
Other names: G. rosea
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